@hian
Even still, if someone thinks a game is bad, they absolutely have a right to criticise it.
Never said that they didn't. I was pointing out that confusing an emotional set-back you have due to something that you personally dislike, and then confusing that with quality issues is objectively wrong.
The statement "I don't like chocolate ice-cream", and "chocolate ice-cream is a bad flavor" are quite different. The first is an opinion, the second is an objectively false statement, because you don't measure the taste of ice-cream with terms like "good" or "bad".
Similarly, there is a very large difference between not liking a character, setting, plot, narrative etc. and from any of these being of poor quality.
People who can't separate these two, really aren't worth listening to.
This knee jerk reaction you talk about in regards to characters and story isn't a misplaced reaction. It simply means the game doesn't click with them. Pretty much me with every Final Fantasy after VI (excluding IX and XIV), I don't like them because I think the characters are shallow and the stories rife with contrivances.
It's a misplaced reaction in terms of basis for criticism that is supposed to say something beyond what you feel about something.
It's fine to emotionally feel repelled by something. It's ridiculous to assume that your emotional reaction is equatable with standards of quality.
Now, it is quite possible that there are perfectly valid reasons underlying your distaste for something. However, psychology teaches us that it's usually the other way around.
It's not necessarily so that the characters are shallow for instance, it's that your sub-consciousness rebels against some aspects of the characters based on how you've been conditioned by past experiences in your life, and you then rationalize that by focusing on what you can explain away, for instance, as being shallow.
This is very apparent when you have huge populations of people playing the exact same games and making completely different opinions on the nature of the content.
I personally find that FF characters have grown more and more human with the passing of time(in general, there are ups and downs of course). For instance, I personally found the cast of FFVII much better realized, more fleshed out, and more human than any characters from any of the previous games. But again, that's probably because they were relate-able to me at that given time.
The fact is, other people who disagree will always try to tell me, and others who share my opinion, that we're wrong. My biggest irritation isn't the games themselves, strangely enough, it's that other many fans of the franchise can't stand it when we voice our opinion. For me, this thread was a good opportunity to share this in a mature environment, hopefully free of fanboyisms and forced opinions. Not naming names, but it's since devolved into "wow you really don't get it, do you? Here's why you're wrong..."
But, here is the thing, which I tried to make clear in my post - whenever you voice your opinion on the nature of a narrative, which you don't phrase as boiling down to emotional responses, you too are essentially saying that everyone else is wrong.
If you say FFwhatever character is shallow, that is a statement that directly contradicts those who don't consider that to be the case. You might not have leveled that as a response to anyone in particular but that really doesn't matter.
A character can't be both shallow, and not shallow at the same time.
What a character can be though, is likeable and unlikable at the same time, because people have different criteria for what they like in people, and we tend to compare the characters we see to our experiences of human beings.
It's for instance impossible for me to see Barrett as being a "shallow stereotype", because I have several friends who act more or less exactly like Barrett. So, knowing that he resembles actual human beings I know, it would be senseless to write him off as a character.
Shadow from FF6 on the other hand is a problem, because I've never actually seen any human being remotely close to being like Shadow.
If you reserve the right to make a statement about a character that is specific beyond the point of more basic in terms of emotions, then you need to be prepared to handle replies from people who experience the exact opposite.
It's good that we're having a legitimate debate, though. More than I can say for a lot of the arguments in this thread.

Speaking of which, it really has gotten off topic.
Well, it's technically topic related though. We're just meta-debating the topic =P
In either case, I will now add two more games to my list -
The Last of Us,
Watch Dogs,
and
GTA5