Probably not, it just came out after all. And there has to be a way to get all 721 pokemon, or the game would be incomplete.Will this actually affect Poké Transporter? It's a 3DS-based service, so I don't see how.
When it comes to that type of software, I use a cable that connects an action replay to the computer. Anything weird will still be working, but yeah, nothing major will be changed since GTS and all that stuff from 4th and 5th gen are in 6th gen.Yeah, that wont be affecting Poke Transfer in any way. The transfer system reads the card itself and does not require a ds internet connection, only 3ds. Now, the only thing I could see becoming an issue is if someone plans on using PokeGen or PokeCheck, but I dont see this really affecting anything official.