After turning off a bunch of scripts I found it was the Yanfly Battle Core Engine that seems to be messing with it when I turn it off it works. Does anyone know why this is? I was looking through the scripts and can't figure it out. Thanks in advance.
I know this doesn't help your problem, but I've found Yanflys battle plugin causes issues with just about every battle plugin I've ever tried. I highly recommend not using it if you plan on having any non-YEP Battle Plugins.
I've taken a look at the plugin and I see something about action sequences in the HELP portion on the bottom. Maybe it has something to do with that?
(F.Mage and F.Healer's FP is 100) F.Mage: We did it! we can beat the monster easily! F.Healer: With the Friendship System,we got stronger thanks to you F.Mage (Hugging) F.Mage: (Blushing) Ahh...don't say like that. we are Best Friend Forever.
(In Distand) M.Mage: They look happy... M.Healer: Yeah...always like that...